To cite the 'gllvm' package in publications use:

Niku, J., Brooks, W., Herliansyah, R., Hui, F. K. C., Korhonen, P., Taskinen, S., van der Veen, B., and Warton, D. I. (2026). gllvm: Generalized Linear Latent Variable Models.R package version 2.0.10.

accompanied by any of associated research articles, as applicable:

Niku, J., Hui, F. K. C., Taskinen, S., and Warton, D. I. (2019). gllvm - Fast analysis of multivariate abundance data with generalized linear latent variable models in R. Methods in Ecology and Evolution, 10, 2173-2182.

Niku, J., Hui, F. K. C., Taskinen, S., and Warton, D. I. (2021). Analyzing environmental-trait interactions in ecological communities with fourth-corner latent variable models. Environmetrics, 32, 1-17.

van der Veen, B. and O'Hara, R.B. (2024). Fast fitting of phylogenetic mixed effects models. arxiv.

van der Veen, B., Hui, F. K. C., Hovstad, K.A., Solbu, E.B., and O'Hara, R.B. (2021). Model-based ordination for species with unequal niche widths. Methods in Ecology and Evolution, 12, 1288-1300.

van der Veen, B., Hui, F. K. C., Hovstad, K.A., and O'Hara, R.B. (2023). Concurrent ordination: simultaneous unconstrained and constrained latent variable modelling. Methods in Ecology and Evolution, 14, 683-695.

Korhonen, P., Hui, F. K. C., Niku, J., and Taskinen, S. (2023). Fast and universal estimation of latent variable models using extended variational approximations. Statistics and Computing, 33, 1-16.

Korhonen, P., Hui, F. K. C., Niku, J., Taskinen, S., and van der Veen, B. (2025). gllvm 2.0: fast fitting of advanced ordination methods and joint species distribution models. PeerJ, 13, e20338.

Corresponding BibTeX entries:

  @Manual{,
    title = {gllvm: Generalized Linear Latent Variable Models},
    author = {Jenni Niku and Wesley Brooks and Riki Herliansyah and
      Francis K. C. Hui and Pekka Korhonen and Sara Taskinen and Bert
      {van der Veen} and David I. Warton},
    year = {2026},
    note = {R package version 2.0.10},
  }

  @Article{,
    title = {gllvm - Fast analysis of multivariate abundance data with
      generalized linear latent variable models in R},
    author = {Jenni Niku and Francis K. C. Hui and Sara Taskinen and
      David I. Warton},
    journal = {Methods in Ecology and Evolution},
    year = {2019},
    volume = {10},
    pages = {2173-2182},
  }

  @Article{,
    title = {Analyzing environmental-trait interactions in ecological
      communities with fourth-corner latent variable models},
    author = {Jenni Niku and Francis K. C. Hui and Sara Taskinen and
      David I. Warton},
    journal = {Environmetrics},
    year = {2021},
    volume = {32},
    pages = {1-17},
  }

  @Article{,
    title = {Fast fitting of phylogenetic mixed effects models},
    author = {Bert {van der Veen} and Robert B. O'Hara},
    journal = {arxiv},
    year = {2024},
  }

  @Article{,
    title = {Model-based ordination for species with unequal niche
      widths},
    author = {Bert {van der Veen} and Francis K. C. Hui and Knut A.
      Hovstad and Erik B. Solbu and Robert B. O'Hara},
    journal = {Methods in Ecology and Evolution},
    year = {2021},
    volume = {12},
    pages = {1288-1300},
  }

  @Article{,
    title = {Concurrent ordination: Simultaneous unconstrained and
      constrained latent variable modelling},
    author = {Bert {van der Veen} and Francis K. C. Hui and Knut A.
      Hovstad and Robert B. O'Hara},
    journal = {Methods in Ecology and Evolution},
    year = {2023},
    volume = {14},
    pages = {683-695},
  }

  @Article{,
    title = {Fast and universal estimation of latent variable models
      using extended variational approximations},
    author = {Pekka Korhonen and Francis K. C. Hui and Jenni Niku and
      Sara Taskinen},
    journal = {Statistics and Computing},
    year = {2023},
    volume = {33},
    pages = {1-16},
  }

  @Article{,
    title = {gllvm 2.0: fast fitting of advanced ordination methods and
      joint species distribution models},
    author = {Pekka Korhonen and Francis K. C. Hui and Jenni Niku and
      Sara Taskinen and Bert {van der Veen}},
    journal = {PeerJ},
    year = {2025},
    volume = {13},
    pages = {e20338},
  }